动物科技学院-西北农林科技大学

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陈宁博

       发布日期:2019-07-03     浏览次数:

     

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一、基本信息

陈宁博,男,1987年生,博士,副教授,硕士生导师,陕西省青年科技新星。兼任中国畜牧兽医学会畜禽标记分会理事/青年委员会委员。致力于中国地方黄牛的起源与迁徙历史和适应性进化的分子机制研究;从线粒体DNA、Y-DNA到全基因组分析,从生物信息学大数据挖掘到细胞功能验证,再到史前牛科动物(古DNA)的时空研究方法,探讨东亚地区黄牛的群体历史及其环境适应的分子机制,从遗传学、考古学等交叉科学的视角,揭示东亚家牛复杂的遗传背景、群体历史及其与环境适应的关系。现兼任BMC Biology、BMC Genomics、Genomics Proteomics Bioinformatics(GPB), Animal Research and One Health (AROH);Journal of Genetics and Genomics (JGG)和Journal of Integrative Agriculture (JIA)、中国农业科学等杂志青年编委。应邀为PNAS,Genome Biology,iScience,BMC Genomics,Journal of Animal Breeding and Genetics,Genetic Selection Evolution,BMC Ecology and Evolution 等杂志审稿。

二、联系方式

通讯地址:陕西杨凌西农路22号西北农林科技大学动物科技学院

邮编:712100

Email: ningbochen@nwafu.edu.cn; ningboch@126.com

三、教育工作经历

[1] 2015/09-2019/06,西北农林科技大学,动物科技学院,博士;

[2] 2019.07-至今,西北农林科技大学动物科技学院,副教授;

[3] 2020.08-2024.01,西北农林科技大学兽医学流动站,博士后。

四、研究方向

[1] 利用古代、现代牛族动物基因组解析中国地方黄牛的群体演化规律及适应性渗入;

[2] 利用 de novo 组装、二代、三代测序技术挖掘中国地方黄牛基因组关键遗传变异;

[3] 利用转录组、调控组等多组学数据研究中国地方黄牛抗逆性状的遗传机制;

[4] 牛基因组遗传变异和调控网络数据库构建。

五、主持科研项目

[1] 国家自然科学基金-生物育种专项,2024-2028;100万;

[2] 陕西省青年科技新星项目,2022-2023;10万;

[3] 国家自然科学基金-青年项目,2022-2024,30万;

[4] 中国博士后科学基金面上项目-特别资助,2021-2022,18万;

[5] 中国博士后科学基金-面上项目,2020-2022,8万;

六、奖励

[1] 中国畜牧兽医学会奖(优秀论文奖),2020年;

[2]

吴常信动物遗传育种科技成果奖,2021年;

[3] 陕西省优秀博士论文,2021年;

[4] ISAG Bursary Winner,2023年。

七、代表性论文

围绕中国黄牛的起源和遗传资源研究,利用古代、现代DNA解析了中国黄牛的群体演化规律和适应性进化。在《PNAS》《Genome Biology》《Science Advances》《Nature Communications》等期刊发表科研论文10余篇。

[1] Ningbo Chen#, Xiaoting Xia#, Quratulain Hanif#, Fengwei Zhang#, Ruihua Dang#, Bizhi Huang#, Yang Lyu, Xiaoyu Luo, Hucai Zhang, Shikang Wang, Fuwen Wang, Jialei Chen, Xiwen Guan, Yangkai Liu, Shuang Li, Liangliang Jin, Pengfei Wang, Luyang Sun, Haijian Cheng, Jicai Zhang, Jianyong Liu, Kaixing Qu, Yanhong Cao, Junli Sun, Yuying Liao, Zhengzhong Xiao, Ming Cai, Lan Mu, AMAM Zonaed Siddiki, Muhammad Asif, Shahid Mansoor, Masroor Ellahi Babar, Tanveer Hussain, Gamamada Liyanage Lalanie Pradeepa Silva, Neena Amatya Gorkhali, Endashaw Terefe,, Gurja Belay, Abdulfatai Tijjani, Tsadkan Zegeye, Mebrate Genet Gebre, Yun Ma, Yu Wang, Yongzhen Huang, Xianyong Lan, Hong Chen, Nicola Rambaldi Migliore, Giulia Colombo, Ornella Semino, Alessandro Achilli, Mikkel-Holger S Sinding, Johannes A Lenstra, Olivier Hanotte*, Jianlin Han*, Yu Jiang*, Chuzhao Lei*. (2023) Global genetic diversity, introgression and evolutionary adaptation of indicine cattle revealed by whole genome sequencing. Nature Communications. 14, 7803.【解析全球瘤牛的起源迁徙路线及其对不同环境的适应性进化】

[2] Ningbo Chen#, Zhengwei Zhang#, Jiawen Ho#, Jialei Chen#, Xuan Gao, Li Tang, Shargan Wangdue, Xiaoming Zhang, Mikkel-Holger S Sinding, Xuexue Liu, Jianlin Han, Hongliang Lü*, Chuzhao Lei*, Fiona Marshall* and Xinyi Liu*. (2023) Evidence for early domestic yak, taurine cattle, and their hybrids on the Tibetan Plateau. Science Advances. 9, eadi6857.【提供了邦嘎黄牛和牦牛发生杂交的遗传学证据】

[3] Xiaoting Xia, Fengwei Zhang, Shuang Li, Xiaoyu Luo, Lixin Peng, Zheng Dong, Hubert Pausch, Alexander S. Leonard, Danang Crysnanto, Shikang Wang, Bin Tong, Johannes A. Lenstra, Jianlin Han, Fuyong Li, Tieshan Xu, Lihong Gu, Liangliang Jin, Ruihua Dang, Yongzhen Huang, Xianyong Lan, Gang Ren, Yu Wang, Yuanpeng Gao, Zhijie Ma, Haijian Cheng, Yun Ma, Hong Chen, Weijun Pang*, Chuzhao Lei*, Ningbo Chen* (2023) Structural variation and introgression from wild populations in East Asian cattle genomes confer adaptation to local environment. Genome Biology. 24, 211.【利用参考基因组和三代数据构建了东亚家牛基因组结构变异集合,利用多组学数据鉴定环境适应性相关SV】

[4] Chen, Ningbo#; Ren, Lele#; Du, Linyao#; Hou, Jiawen#; Mullin, VictoriaE.; Wu, Duo; Zhao, Xueye; Li, Chunmei; Huang, Jiahui; Qi, Xuebin; Capodiferro, Marco Rosario; Achilli, Alessandro; Lei, Chuzhao; Chen, Fahu; Su, Bing*; Dong, Guanghui*; Zhang, Xiaoming*. (2020) Ancient genomes reveal tropical bovid species in the Tibetan Plateau contributed to the prevalence of hunting game until the late Neolithic. Proceedings of the National Academy of Sciences, 2020, 117(45): 28150-28159.【古代基因组揭示印度野牛的史前分布及其对中国瘤牛的影响】

[5] Chen Ningbo#; Cai Yudong#; Chen Qiuming#; Li Ran#; Wang Kun#; Huang Yongzhen#; Hu Songmei; Huang Shisheng; Zhang Hucai; Zheng Zhuqing; Song Weining; Ma Zhijie; Ma Yun; Dang Ruihua; Zhang Zijing; Xu Lei; Jia Yutang; Liu Shanzhai; Yue Xiangpeng; Deng Weidong; Zhang Xiaoming; Sun Zhouyong; Lan Xianyong; Han Jianlin; Chen Hong; Bradley Daniel G; Jiang Yu*; Lei Chuzhao*. (2018) Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia. Nature Communications 9.【解析了中国地方家牛的群体演化规律和适应性渗入】

[6] Chen, Ningbo#; Fu, Weiwei#; Zhao, Jianbang; Shen, Jiafei; Chen, Qiuming; Zheng, Zhuqing; Chen, Hong; Sonstegard, Tad S.; Lei, Chuzhao; Jiang, Yu*. (2020) BGVD: Integrated Web-database for Bovine Sequencing Variations and Selective Signatures. Genomics, Proteomics & Bioinformatics. 2020, 18(2): 186-193. 【构建全世界家牛基因组遗传变异数据库】

[7] Yang Lyu, Tingting Yao, Zhefu Chen, Ruiyao Huangfu, Haijian Cheng, Weidong Ma, Xingshan Qi, Fuqiang Li, Ningbo Chen*, Chuzhao Lei*.(2024) Genomic characterization of dryland adaptation in endangered Anxi cattle in China. Animal Genetics. DOI: 10.1111/age.13416

[8] Fengwei Zhang#, Chong Wang#, Haiyue Xu#, Xiaoting Xia, Xiaoyu Luo, Kaihui Li, Jianlin Han, Chuzhao Lei*, Ningbo Chen*, Xiangpeng Yue*. (2023) Genomic analysis reveals a KIT-related chromosomal translocation associated with the white coat phenotype in yak. Journal of Animal Breeding and Genetics. 140(3):330-342. 【利用GWAS解析了白牦牛白色与KIT基因易位相关,并发现该易位基因来源于普通牛的渗入】

[9] Xiaoting Xia, Kaixing Qu, Yan Wang, Mikkel‑Holger S. Sinding, Fuwen Wang, Quratulain Hanif, Zulfqar Ahmed, Johannes A. Lenstra, Jianlin Han, Chuzhao Lei* and Ningbo Chen*. (2023) Global dispersal and adaptive evolution of domestic cattle: a genomic perspective. Stress Biology. (2023) 3:8. 【从基因组角度综述全世界家牛的扩散规律和适应性进化】

[10] Ningbo Chen, Artem Nedoluzhko. (2023) Ancient DNA: the past for the future. BMC Genomics 2023 24:309.

[11] Yang Lyu, Yaxuan Ren, Kaixing Qu, Suolang Quji, Basang Zhuzha, Chuzhao Lei*, Ningbo Chen* (2023) Local ancestry and selection in admixed Sanjiang cattle. Stress Biology. (2023) 3:30.

[12] 陈宁博,雷初朝.从DNA角度认识中国黄牛的起源和利用历史.第四纪研究,2022,42(1):92-100.

[13] Yuqing Han#, Lulan Zeng#, Shuang Li, Gaoxiang Yuan, Ying Liu, Xuhong Ding, Kaixing Qu, Fuqiang Li, Jicai Zhang, Chuzhao Le, Bizhi Huang*, Ningbo Chen*. (2021) T2R12 gene variation in Chinese native cattle owing to banteng introgression. Animal Genetics,52(4):565-566. (IF=3.169)

[14] Xiaoting Xia, Alessandro Achilli, Johannes A. Lenstra, Bin Tong, Yun Ma, Yongzhen Huang, Jianlin Han, Zhouyong Sun, Hong Chen, Chuzhao Lei, Songmei Hu*, Ningbo Chen*. (2021) Mitochondrial genomes from modern and ancient Turano-Mongolian cattle reveal an ancient diversity of taurine maternal lineages in East Asia. Heredity, 126(6):100-1008.

[15] Chen Ningbo#; Huang Jieping#; Zulfiqar Abbasi; Li Ran; Xi Yulian; Zhang Mingming; Dang Ruihua; Lan Xianyong; Chen Hong; Ma Yun; Lei Chuzhao*. (2018) Population structure and ancestry of Qinchuan cattle. Animal Genetics 49, 246-8.

八、发明专利

[1] 陈宁博;雷初朝;许星龙;夏小婷;党瑞华;黄永震;蓝贤勇;陈宏.一种利用Y染色体单核苷酸遗传标记鉴定瘤牛公牛来源的方法(授权专利号:ZL202111277432.3)

[2] 陈宁博;雷初朝;陈嘉磊;张俸伟;宋仁德;晓虎;贺顺忠;白玛求措;宋维茹;李淑玲;索南代青;拉巴永措;巴阳.一种利用MC1R基因单核苷酸遗传标记鉴定金丝牦牛品种的方法(授权专利号:ZL202111165152.3)

九、参加的国内国际大会

[1] Structural Variation and Wild Introgression in East Asian Cattle, PAG Australia (Perth, 2023);

[2] History and unique evolutionary adaptation of indicine cattle, PAG Australia (Perth, 2023);

[3] 全世界瘤牛基因组遗传变异与环境适应性研究,第二十二次全国动物遗传育种学术讨论会 (太原,2023)

[4] 全世界瘤牛的起源进化和适应性研究,第十八次全国畜禽遗传标记学术研讨会 (大会报告,南京,2023)

[5] 中国地方黄牛的群体演化规律和适应性研究,中国畜牧兽医学会家畜生态学分会2023年学术研讨会(大会报告,扬州,2023)

[6] 青藏高原黄牛的起源和环境适应性研究,第六届中国肉牛选育改良与产业发展国际研讨会(大会报告,杨凌,2023);

[7] 中国地方黄牛的群体演化规律和适应性研究,第二届动物生物育种国际研讨会(分会报告,西安,2023);

[8] Genomic landscape of Chinese cattle, PAG ASIA (Online Conference, 2022);

[9] The tropical and subtropical adaptation and genetic diversity of Chinese local cattle based on the whole-genome data,PAG ASIA (深圳,2019);

[10] 中国黄牛的遗传多样性来源,第二十次全国动物遗传育种学术讨论会 (广州,2019);

动物科技学院-西北农林科技大学