一、 基本信息

姜雨，1983年生，男，二级教授，博导

西北农林科技大学 动物科技学院 院长

农业农村部畜禽资源评价利用重点实验室 主任

通讯地址：陕西省杨凌区西农路22号 邮编：712100

电子邮箱：jiangyu96@163.com；

实验室网址：http://animal.nwsuaf.edu.cn/

工作学习经历:

2002-2006 复旦大学 生命科学院 理学学士

2006-2011 中国科学院 昆明动物所 遗传学博士

2011-2013 澳大利亚联邦科学院 家畜所 博士后

2013-2015 西北农林科技大学 动物科技学院 副教授

2015-至今 西北农林科技大学 动物科技学院 教授

(从2015年至今已培养毕业博士生7人，其中6人在国内一流科研单位工作，1人在德国康斯坦茨大学做博士后，已培养毕业硕士生25人，其中9人在本实验室转博，6人在复旦大学等其他高校继续读博，3人获得国外实验室全奖继续读博，7人在生物信息公司就业)

二、 研究方向

运用群体遗传学理论和基因组学技术，着重解析反刍家畜的遗传资源、关键性状变异及分子机制，促进了对牛羊的遗传解析和育种进展。构建了世界上首个绵羊和山羊的参考基因组和泛基因组，并对世界主要牛羊品种的SNP和CNV变异信息和频率进行了系统整理分析，构建了家畜遗传变异数据库http://animal.nwsuaf.edu.cn/，解析出构成瘤胃壁的特异基因家族和反刍动物特有的脂类合成代谢途径，部分解释了瘤胃和羊毛脂产生的遗传基础，发表在2014年的Science杂志。通过创新生物信息学分析方法，首次将光学图谱用于基因组组装和进行全基因组结构变异的关联分析，在Nature Biotechnology杂志发表论文两篇。在2019年从遗传学角度首次提出牛羊鹿的角具有相同的细胞起源—头部神经脊干细胞，为无角牛、羊的育种提供了理论基础和关键靶基因，以封面论文发表在Science杂志上。系统解析了世界牛羊品种的遗传来源，鉴定出关键抗病基因MUC6，发表在Nature Communications、Science Advances等杂志上。近五年来，以通讯作者发表论文 60余篇，被引用4000余次。研究成果入选2019年“中国生命科学十大进展”和2020年中国农业科学重大进展。

三、参与项目和获奖

主持科技部重点研发计划、国家地区联合重点基金项目、优秀青年科学基金项目、面上项目，以及省部级科研项目20余项。

1.科技部重点研发项目，主要农业动物优异种质资源形成与演化机制， SQ2022YFF1000051，2500万元，2023.01-2027.12，主持

2.国家自然科学优秀青年基金，150万元，2019.01-2021.12，主持；

3.陕西省农业科技创新计划项目，畜禽种质资源DNA分子指纹图谱库和特征库建设，180万元，2022.06-2023.06，主持。

4.反刍动物遗传与进化科技创新团队，陕西省科技创新团队项目，50万元，2022.03-2025.03.01，主持；

5.2021年宁夏回族自治区重点研发计划农业农村领域重大项目子课题，高产奶牛高产期健康控制技术研发与应用，50万元，2021.01-2023.12，主持；

获得人才及奖励如下：

1. 获得2014年中国科学院“优秀博士学位论文奖”

2. 入选2015年“国家青年人才计划”项目

3. 获得2018年农业部“杰出青年农业科学家”称号

4. 获得2019年云南省“自然科学奖”一等奖（1/7）

5. 获得2021年陕西省“优秀博士论文指导教师奖”

四、5篇代表性论文

1. Li Z, Wang X, Zhang Y, …, Huang H*, Jiang Y*. Genomic insights into the phylogeny and biomass-degrading enzymes of rumen ciliates.  ISME J  (2022) (IF="11.210)

2. Wang Y, Zhang C, Wang N, ,…, Jiang Y*,Wang W*, Q Qiang*. Genetic basis of ruminant headgear and rapid antler regeneration.  Science  (2019) （封面论文）(IF=63.714)

3. Chen L#, Qiu Q#, Jiang Y#,,…,Heller R*, Wang W*. Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.  Science  (2019) （封面论文）(IF=63.714)

4. Chen N#, Cai Y#, Chen Q#,...,Jiang Y*, Lei C*. Whole-genome resequencing reveals world-wide ancestry and multiple adaptive introgression events of domesticated cattle in East Asia.  Nature Communications  (2018) (IF=17.694)

5. Jiang Y#, Xie M#, Chen W#…, Wang W*, Dalrymple B*. 2014. The sheep genome illuminates biology of the rumen and lipid metabolism.  Science  (2014) (IF=63.714)

五、历年以第一(#)或通讯(*)发表的论文

2022

· Fu W#, Wang R#, Asadollahpour Nanaei H#, ..., Jiang Y*. RGD v2.0: a major update of the ruminant functional and evolutionary genomics database. Nucleic Acids Research  (2022)(IF="19.160)

· Li Z, Wang X, Zhang Y, …, Huang H*, Jiang Y*.Genomic insights into the phylogeny and biomass-degrading enzymes of rumen ciliates.  ISME J  (2022) (IF="11.210)

· Li M#, Sun C#, Xu N#, ..., Hu X*, Jiang Y*, Yang N*. De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions. Molecular Biology and Evolution  (2022)(IF="8.800)"

· Cai D#, Zhu S#, Gong M#, ..., Jiang Y*. Radiocarbon and genomic evidence for the survival of Equus Sussemionus until the late Holocene. Elife  (2022)(IF="8.713)

· Billah M#, Wang X#, Jiantao Yu#, Jiang Y*. Real-time goat face recognition using convolutional neural network. Computers and Electronics in Agriculture  (2022)(IF="6.757)

· Li A#, Yang Q#, Li R#, ..., Cai K*, Lei Y*, Jia K*, Jiang Y*, Zan L*. Chromosome-level Genome Assembly for Takin (Budorcas taxicolor) Provides Insights into Its Taxonomic Status and Genetic Diversity. Molecular Ecology  (2022)(IF="6.622)

· Shang Z#, Wang X#, Jiang Y*, Li Z*, Ning J*. Idenifying rumen protozoa in microscopic images of ruminant with improved YOLACT instance segmentation. Biosystems Engineering  (2022)(IF="5.002)

· Shen J#, Chen Q#, Zhang F#, ..., Jiang Y*, Lei C*. Genome-wide association study identifies quantitative trait loci affecting cattle temperament. Zoological Research  (2022)(IF="6.975)

· Gong M#, Yang P#, Fang W#, ..., Jiang Y*. Building a cattle pan-genome using more de novo assemblies. Journal of Genetics and Genomics  (2022)(IF="5.723)

· Wang F#, Shao J#, He S#, ..., Jiang Y*. Allele-specific expression and splicing provide insight into the phenotypic differences between thin- and fat-tailed sheep breeds. Journal of Genetics and Genomics  (2022)(IF="5.723)

· Fu W#, Wang R#, Xu N#, ..., Jiang Y*. Galbase: a comprehensive repository for integrating chicken multi-omics data. BMC Genomics  (2022)(IF="4.547)

2021

· Huang Y#, Li Y#, Wang X#,..., Jiang Y*. An atlas of CNV maps in cattle, goat and sheep.  SCIENCE CHINA Life Sciences  (2021)(IF="10.372)

· Li R#, Yang P#, Li M#,..., Jiang Y*. A Hu sheep genome with the first ovine Y chromosome reveal introgression history after sheep domestication.  SCIENCE CHINA Life Sciences  (2021)(IF="10.372)

· Li J#, Zhang J#, Liu J#, ..., Jiang Y*, Zhou Z*, Zhang G*, Zhou Q*. A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals. Gigascience.  (2021)(IF="7.658)

· Li R#, Yang P#, Dai X#,..., Wang X & Jiang Y*. A near complete genome for goat genetic and genomic research. Genetics Selection Evolution.  (2021)(IF="5.100)

· Wang M#, Zhang J#, Guo X#, Jiang Y#,..., Bosse M*, Wu D*, Han J & Zhang Y*. Large-scale genomic analysis reveals the genetic cost of chicken domestication. BMC Biology  (2021)(IF="7.364)

· Pan X#, lI Z#,..., Jiang Y*. Dynamics of rumen gene expression, microbiome colonization, and their interplay in goats.  BMC Genomics  (2021)(IF="4.547)

· Fu W#,..., Jiang Y*. GGVD: A goat genome variation database for tracking the dynamic evolutionary process of selective signatures and ancient introgressions.  Journal of Genetics and Genomics  (2021)(IF="5.723)

2020

· Wang M#, Mukesh Thakur#, Peng M#, Jiang Y#,..., Wu D&Zhang Y*. 863 genomes reveal the origin and domestication of chicken.  Cell Research  (2020)(cover story,IF="46.297)

· Zheng Z#, Wang X# , Li M#,..., Chen Y*, Jiang Y*. The origin of domestication genes in goats. Science Advances  (2020)(cover story,IF="14.957)

· Jiao F#, Lou R#, Dai X#,...,Qian Y*, Zhao A*, Jiang Y*. Chromosome-level reference genome and population genomic analysis provide insight into the evolution and improvement of domesticated mulberry (Morus alba L).  Molecular Plant (2020)(IF=21.949)

· Pan X#, Cai Y#, Li Z#,..., Wang W*, Jiang Y*. Modes of genetic adaptations underlying functional innovations in the rumen.  SCIENCE CHINA Life Sciences  (2020)(cover story,IF="10.372)

· Cai Y#, Fu W#, Cai D#,..., Jiang Y*, Wang X*. Ancient genomes reveal the evolutionary history and origin of cashmere producing goats in China.  Molecular Biology and Evolution  (2020)(cover story,IF="8.800)

· Chen, N#, Fu W#, Zhao J#,..., Jiang, Y*. The Bovine Genome Variation Database (BGVD): Integrated Web-database for Bovine Sequencing Variations and Selective Signatures.  Genomics, Proteomics & Bioinformatics  (2020)(IF="6.409)

· Sun T#, Shen S#, Achilli A#,..., Jiang Y*, Lei C*. Genomic Analyses Reveal Distinct Genetic Architectures and Selective Pressures in Buffaloes.  GigaScience  (2020)(IF="7.658)

§ Wang J#, Fu W#,..., Jiang Y*, Kang Z*. WGVD: an integrated web-database for wheat genome variation and selective signatures.  Database-The Journal of Biological Databases and Curation (2020)(IF=4.462)

2019

· Chen L#, Qiu Q#, Jiang Y#,..., Heller R*, Wang W*. Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.  Science  (2019)(cover story,IF="63.714)

· Wang Y#, Zhang C#, Wang N#,..., Jiang Y*,Wang W*, Q Qiang*. Genetic basis of ruminant headgear and rapid antler regeneration.  Science  (2019)(cover story,IF="63.714)

· Cheng H#，Liu J#，Wen J#,..., Song W*, Sun Q*, Jiang Y*. Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat.  Genome Biology  (2019)(IF="17.906)

· Tian X#, Li R#, Fu W#,..., Li M, Jiang Y*. Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data.  SCIENCE CHINA Life Sciences  (2019)(IF="10.372)

· Li R#, Tian, X#,..., Jiang Y*. Recovery of non-reference sequences missing from the human reference genome.  BMC Genomics (2019)(IF=4.547)

· Cao Y#, Xu H#, Li R#,..., Luo J*, Jiang Y*. Genetic Basis of Phenotypic Differences Between Chinese Yunling Black Goats and Nubian Goats Revealed by Allele-Specific Expression in Their F1 Hybrids.  Frontiers in Genetics  (2019)(IF="4.772)

· Li R#, Fu W#,Su R#,...,Li J*, Jiang Y*. Towards the Complete Goat Pan-Genome by Recovering Missing Genomic Segments From the Reference Genome.  Frontiers in Genetics (2019)(IF=4.772)

· Li C#, Li M#, Li X#,..., Jiang Y*，Hu S*. Whole-genome resequencing reveals loci associated with thoracic vertebrae number in sheep.  Frontiers in Genetics  (2019)(IF="4.772)

· Wang Y#, Gao S#, Zhao Y#,..., Jiang Y*. Allele-specific expression and alternative splicing in horse×donkey and cattle×yak hybrids.  ZOOLOGICAL RESEARCH  (2019)(cover story,IF="6.975)

2018

· Chen N#, Cai Y#, Chen Q#,..., Jiang Y*, Lei C*. Whole-genome resequencing reveals world-wide ancestry and multiple adaptive introgression events of domesticated cattle in East Asia.  Nature communications  (2018)(IF="17.694)

· Zhou Z#, Li M#, Cheng H#,..., Hou S*, Jiang Y*. An intercross population study reveals genes associated with body size and plumage color in ducks.  Nature communications  (2018)(IF="17.694)

· Wang X#, Liu J#, Niu Y#,..., Huang X, Jiang Y*, Chen Y*. Low incidence of SNVs and indels in trio genomes of Cas9-mediated multiplex edited sheep.  BMC Genomics  (2018)(IF="4.547)

2017

· Wang X#, Zheng Z#, Cai Y#,..., Jiang Y*. CNVcaller: Highly Efficient and Widely Applicable Software for Detecting Copy Number Variations in Large Populations.  GigaScience  (2017)(IF="7.658)

· Li M#, Zhou H#, Pan X#,..., Zi X, Jiang Y*. Cassava foliage affects the microbial diversity of Chinese indigenous geese caecum using 16S rRNA sequencing.  Scientific Reports  (2017)(IF="4.996)

2015

· Zhou Z#, Jiang Y#, Wang Z,..., Wang W*, Tian Z*. Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean.  Nature Biotechnology  (2015)  (ESI Highly Cited Papers) (IF=68.164)

· Dong Y#, Zhang X#, Xie M#,..., Wang W*, Jiang Y*. Reference genome of wild goat (Capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication.  BMC Genomics  (2015)(IF="4.547)

· Jiang Y#, Wang X#, Kijas J#, Dalrymple B#. Beta globin gene evolution in the ruminants: evidence for an ancient origin of sheep haplotype B.  Animal Genetics  (2015)(IF="2.884)

· Chen H#, Jiang Y*. Progress and Prospects in Domestic Animals and Breeding: a Review of Genomic Copy Number Variations.  Biotechnology Bulletin  (2015)(IF="1.932)

2014 and before

· Jiang Y#, Xie M#, Chen W#,..., Wang W*, Brian P. Dalrymple*. The sheep genome illuminates biology of the rumen and lipid metabolism.  Science  (2014)(IF="63.714)

· Dong Y#, Xie M#, Jiang Y#, …, Wang J*, Wang W* (2013) Sequencing and automated whole-genome optical mapping of the genome of a domestic goat.  Nature Biotechnology  (2013)  (ESI Highly Cited Papers) (IF=68.164)

· Jiang Y#, Li Y#, Lee W#, …, Zhang Y*, Wang W* Venom gland transcriptomes of two elapid snakes ( Bungarus multicinctus and Naja atra ) and evolution of toxin genes.  BMC Genomics  (2011)(IF="4.547)