一、 基本信息

姜 雨，二级教授、动科学院院长，中国动物遗传育种学分会常务理事、中国畜牧业协会智能畜牧分会副会长、农业农村部畜禽资源评价利用重点实验室联合主任。2006年毕业于复旦大学生命学院, 获学士学位。2011年在中科院昆明动物所王文研究员指导下获遗传学博士学位。2011年至2013年在澳大利亚联邦科学院家畜所Brian P. Dalrymple实验室开展博士后工作。2013年11月以副教授被引进到西北农林科技大学，2015年起聘为教授。

长期从事生物组学分析方法创新和家养动物遗传资源解析工作，构建了世界上首个绵羊和山羊的参考基因组及泛基因组，收集和分析了全球反刍家畜品种、 古代样品及野生物种的多组学和表型数据，鉴定出LCORL、STC2、IGF2BP1等多个显著增加生长速度和体型大小的关键功能基因的因果变异，服务了反刍家畜分子育种的基础创新，支持了羊的新品种选育。以第一或通讯作者（含共同） 在 Science（3 篇）、Nature Biotechnology（2 篇）、Nature Genetics、Science Advances（2 篇）、 Nature Communications（5 篇）、Cell Research（2 篇）等期刊发表论文 70 余篇，他引近 7000 次，是《GPB》、《JGG》、《ZR》、《AROH》等国际期刊的编委，《中国牛业科学》的主编。主持了国家重点研发计划“主要农业动物优异种质资源形成与演化机制”，基金委的优青项目、联合基金重点项目、面上项目，以及省部级科研项目20余项。

电子邮箱：jiangyu96@163.com （欢迎报考研究生、博士后）

实验室网址：http://animal.omics.pro/

二、获得的主要奖励和荣誉：

2023年国家自然科学二等奖（第二完成人）

2019年云南省自然科学一等奖（第一完成人）

2022年教育部自然科学一等奖（第二完成人）

2022年农业农村部“神农青年英才”

2018年农业农村部“杰出青年农业科学家”

2014年中国科学院优秀博士论文奖

2021年陕西省优秀博士论文奖导师奖

2022年陕西省优秀博士论文奖导师奖

2024年陕西省优秀博士论文奖导师奖

三、5篇代表性论文

1.Yang Q#; Sun J#, …, Cai Y*, Jiang Y*.; SVLearn: a dual-reference machine learning approach enables accurate cross-species genotyping of structural variants,  Nature Communications  (2025)

2. Zheng Z#, Wang X# , Li M#,..., Chen Y*, Jiang Y*. The origin of domestication genes in goats. Science Advances  (2020)

3. Wang Y#, Zhang C#, Wang N#, ,…, Jiang Y*,Wang W*, Q Qiang*. Genetic basis of ruminant headgear and rapid antler regeneration.  Science  (2019)

4. Chen L#, Qiu Q#, Jiang Y#,,…,Heller R*, Wang W*. Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.  Science  (2019)

5. Jiang Y#, Xie M#, Chen W#…, Wang W*, Dalrymple B*. 2014. The sheep genome illuminates biology of the rumen and lipid metabolism.  Science  (2014)

四、以第一或通讯作者（含并列）发表论文

2025

Yang Q#, Sun J#, Wang X,..., Cai Y*, Jiang      Y*. SVLearn: a      dual-reference machine learning approach enables accurate cross-species      genotyping of structural variants.  Nature      communications  (2025)(IF=14.700)

Bai F#, Cai Y#, Qi M,...,Jiang Y*.  LCORL and STC2      Variants Increase Body Size and Growth Rate in Cattle and Other Animals.  Genomics, Proteomics & Bioinformatics       (2025)(IF=11.500)

Niyazbekoca Z#, Xu Y#, Qiu M,..., Jiang      Y*, Cai Y*. Whole-genome      sequencing reveals genetic architecture and selection signatures of Kazakh      cattle.  Zoological research       (2025)(IF=4.000)

Luo F#, Chen S#, Nanaei HA,...,Dai X*, Jiang      Y*. Genetic basis and      origin of coat color in Leiqiong cattle.  Zoological      research  (2025)(IF=4.000)

Zhang X, Ma H, Wang S,..., Jiang Y*,      Liu Q*. NPI-HGNN:      A Heterogeneous Graph Neural Network-Based Approach for Predicting      ncRNA-Protein Interactions.  Interdisciplinary      Sciences: Computational Life Sciences  (2025)(IF=3.900)

Yao X#, Li J#, Fu J,...,Wang X*, Jiang      Y*. Genomic Landscape and      Prediction of Udder Traits in Saanen Dairy Goats.  Animals  (2025)(IF=2.700)

Zhang J#*, Pang S, Yan G,...,Jiang      Y* Integrated electronic      nose and multi-omics reveal changes in flavour characterization of      cashmere goats and tan sheep meat.  Food      Chemistry: X  (2025)(IF=6.500)

Ren J, Kou W, Xu Y,..., Jiang Y*,      Wang F*. Pan-genome      analyses add ∼1000 genes to the "complete" genome assembly of      chicken. Journal of Genetics and      Genomics  (2025)(IF=6.600)

2024

Bian P#, Li J#, Zhou S#,  Zheng W*, Jiang Y*, Wang X*. A Graph-based Goat Pangenome Reveals      Structural Variations Involved in Domestication and Adaptation.  Molecular Biology and Evolution  (2024)(IF=11.003)

Cai Y#, Gao X#, Mao J#,...,Fei Z*, Jiang      Y*, Zhang D*.Genome      sequencing of ‘Fuji’apple clonal varieties reveals genetic mechanism of      the spur-type morphology.  Nature      communications  (2024)(IF=14.700)

Li A#, Yang Q#, Li R#,..., Jiang Y*,      Zan L*. Chromosome‐Level      Genome Assembly for the Chinese Serow (Capricornis milneedwardsii)      Provides Insights Into Its Taxonomic Status and Evolution.  Ecology and Evolution  (2024)(IF=2.300)

Zhang X, Zhao L, Chai Z,..., Li C*, Jiang      Y*,Liu Q*. NPI-DCGNN:      An Accurate Tool for Identifying ncRNA-Protein Interactions Using a      Dual-Channel Graph Neural Network.  Journal      of Computational Biology  (2024)(IF=1.400)

Zhao L, Hao R, Chai Z,..., Li C*, Liu      Q*, Jiang Y*. DeepOCR:      A multi-species deep-learning framework for accurate identification of      open chromatin regions in livestock.  Computational      Biology and Chemistry  (2024)(IF=2.600)

Wang X#, Chai Z#, Li S#,...,Li C*, Jiang      Y*,Liu Q*. CTISL:      a dynamic stacking multi-class classification approach for identifying      cell types from single-cell RNA-seq data.  Bioinformatics       (2024)(IF=4.399)

2023

Chen N#, Xia X#, Hanif Q#,...,Hanotte      O*, Han J* Jiang Y*,Lei C* Global genetic diversity, introgression, and evolutionary adaptation      of indicine cattle revealed by whole genome sequencing.  Nature Communications  (2023)(IF=14.700)

Dai X#, Bian P#, Hu D#,...,Heller R*, Jiang      Y* A Chinese indicine      pangenome reveals a wealth of novel structural variants introgressed from      other Bos species. Genome Research  (2023)(IF=6.200)

Zhang Z#, Wang A#, Hu H#,..., Ma Y*,      Cai Y*, Jiang Y*. The      efficient phasing and imputation pipeline of low‐coverage whole genome      sequencing data using a high‐quality and publicly available reference      panel in cattle.  Animal Research and      One Health  (2023)

Dou M#, Li M#, Zheng Z#,...,Zheng W*,      Wang X*, Jiang Y*, A missense mutation in RRM1 contributes to animal tameness.  Science Advances  (2023)(IF=11.700)

Pan X#, Ma Z#, Sun X#,...,Wang W*, Jiang      Y*, Wang Y*.CNEReg      interprets ruminant-specific conserved non-coding elements by      developmental gene regulatory network.  Genomics Proteomics Bioinformatics  (2023)(IF=11.500)

Shen J#, Xia X#, Sun L,...,Jiang Y*,      Lei C*. Genome-wide      association study reveals that the IBSP locus affects ear size in cattle. Heredity  (2023)(IF=3.100)

Li R#, Gong M#, Zhang X#,...,Gan S*,      Jiang Y*. A      sheep pangenome reveals the spectrum of structural variations and their      effects on tail phenotypes.  Genome      Research  (2023)(IF=6.200)

Li A, Yang Q, Li R,..., Jiang Y*,      Zan L*. Chromosome‐level      genome assembly for takin (Budorcas taxicolor) provides insights into its      taxonomic status and genetic diversity.  Molecular      Ecology  (2023)(IF=4.500)

Cheng H#, Zhang Z#,Wen J#,..., Jiang      Y*. Long divergent      haplotypes introgressed from wild sheep are associated with distinct      morphological and adaptive characteristics in domestic sheep.  Plos Genetics  (2023)(IF=4.000)

Nanaei NA#, Cai Y#, Alshawi A,..., Wang      X*, Jiang Y*. Genomic      analysis of indigenous goats in Southwest Asia reveals evidence of ancient      adaptive introgression related to desert climate.  Zoological Research  (2023)(IF=4.000)

Cao C#, Kang Y#, Zhou Q,..., Jiang      Y, Lan X, Pan C*. Whole-genome      resequencing reveals the genomic diversity and signatures of selection in      Romanov sheep.  Journal of Animal      Science  (2023)(IF=2.700)

Guo Y, Bai F, Wang J,..., Jiang Y*. Design and characterization of a      high-resolution multiple-SNP capture array by target sequencing for sheep.       Journal of Animal Science  (2023)(IF=2.700)

2022

Zhang T#, Li M#, Shi T,..., Li Z*, Jiang Y*.Transmission of the gut microbiome in      cohousing goats and pigs.  Frontiers      in Microbiology  (2022)(IF=4.000)

Yang Z#, Li J#, Zheng Z,..., Jiang      Y*, Zheng W*, Wang X*.Allele-specific expression analyses reveal immune divergences between      ibex and goat species. Zoological Research (2022)(IF=4.000)

Shi T, Zhang T, Wang X,..., Li Z*, Jiang Y*.Metagenomic Analysis of in Vitro Ruminal      Fermentation Reveals the Role of the Copresent Microbiome in Plant Biomass      Degradation.  Journal of Agricultural and Food      Chemistry  (2022)(IF=5.700)

Wang F#, Guo Y#, Liu Z#,..., Jiang Y, Zhuo R*.New insights into the novel sequences of the      chicken pan-genome by liquid chip. Journal of Animal Science  (2022)(IF=2.700)

Li C#, Wu Y#, Chen B#,..., Han J*, Jiang Y*, Wang X*. Markhor-derived Introgression of a Genomic      Region Encompassing PAPSS2 Confers High-altitude Adaptability in Tibetan      Goats.  Molecular Biology and      Evolution  (2022)(IF=11.003)

Fu W#, Wang R#, Asadollahpour Nanaei      H#, ..., Jiang Y*. RGD v2.0: a major update of the ruminant functional and      evolutionary genomics database.  Nucleic Acids Research       (2022)(IF=19.160)

Li Z, Wang X, Zhang Y, …, Huang H*,      Jiang Y*.Genomic insights into the phylogeny and      biomass-degrading enzymes of rumen ciliates.  ISME J (2022) (IF=11.210)

Li M#, Sun C#, Xu N#, ..., Hu X*, Jiang      Y*, Yang N*. De Novo Assembly of 20 Chicken Genomes Reveals the      Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes      and Subtelomeric Regions.  Molecular Biology and Evolution       (2022)(IF=11.003)

Cai D#, Zhu S#, Gong M#, ..., Jiang      Y*.      Radiocarbon and genomic evidence for the survival of Equus Sussemionus      until the late Holocene.  Elife  (2022)(IF=8.713)

Billah M#, Wang X#, Jiantao Yu#, Jiang      Y*. Real-time goat face recognition using convolutional      neural network.  Computers and Electronics in Agriculture       (2022)(IF=6.757)

Shang Z#, Wang X#, Jiang Y*, Li      Z*, Ning J*. Idenifying rumen protozoa in microscopic images of      ruminant with improved YOLACT instance segmentation.  Biosystems      Engineering  (2022)(IF=5.002)

Li A#, Yang Q#, Li R#, ..., Cai K*, Lei      Y*, Jia K*, Jiang Y*, Zan L*. Chromosome-level      Genome Assembly for Takin (Budorcas taxicolor) Provides Insights into Its      Taxonomic Status and Genetic Diversity.  Molecular Ecology       (2022)(IF=6.622)

Shen J#, Chen Q#, Zhang F#, ..., Jiang      Y*, Lei C*. Genome-wide association study identifies quantitative      trait loci affecting cattle temperament.  Zoological Research       (2022)(IF=6.975)

Gong M#, Yang P#, Fang W#, ..., Jiang      Y*. Building a cattle pan-genome using more de novo      assemblies.  Journal of Genetics and Genomics       (2022)(IF=5.723)

Wang F#, Shao J#, He S#, ..., Jiang      Y*. Allele-specific expression and splicing provide insight      into the phenotypic differences between thin- and fat-tailed sheep breeds.       Journal of Genetics and Genomics  (2022)(IF=5.723)

Fu W#, Wang R#, Xu N#, ..., Jiang Y*. Galbase: a comprehensive repository for integrating      chicken multi-omics data.  BMC Genomics  (2022)(IF=4.547)

2021

Huang Y#, Li Y#, Wang X#,..., Jiang      Y*. An atlas of CNV maps in cattle, goat and sheep.  SCIENCE      CHINA Life Sciences  (2021)(IF=10.372)

Li R#, Yang P#, Li M#,..., Jiang Y*. A Hu      sheep genome with the first ovine Y chromosome reveal introgression      history after sheep domestication.  SCIENCE CHINA Life Sciences       (2021)(IF=10.372)

Li J#, Zhang J#, Liu J#, ..., Jiang      Y*, Zhou Z*, Zhang G*, Zhou Q*. A new duck genome reveals conserved and convergently      evolved chromosome architectures of birds and mammals.  Gigascience.       (2021)(IF=7.658)

Li R#, Yang P#, Dai X#,..., Wang X      & Jiang Y*. A near complete genome for goat genetic and genomic      research.  Genetics Selection Evolution.  (2021)(IF=5.100)

Wang M#, Zhang J#, Guo X#, Jiang Y#,...,      Bosse M*, Wu D*, Han J & Zhang Y*. Large-scale genomic analysis reveals the genetic cost of      chicken domestication.  BMC Biology  (2021)(IF=7.364)

Pan X#, lI Z#,..., Jiang Y*. Dynamics of rumen gene expression, microbiome      colonization, and their interplay in goats. BMC Genomics       (2021)(IF=4.547)

Fu W#,..., Jiang Y*. GGVD: A goat genome variation database for tracking the      dynamic evolutionary process of selective signatures and ancient      introgressions. Journal of Genetics and Genomics       (2021)(IF=5.723)

2020

Wang M#, Mukesh Thakur#, Peng M#, Jiang      Y#,..., Wu D&Zhang Y*. 863 genomes reveal the origin and domestication of      chicken.  Cell Research  (2020)(cover story,IF=46.297)

Zheng Z#, Wang X# , Li M#,..., Chen Y*,      Jiang Y*. The origin of domestication genes in goats.  Science      Advances  (2020)(cover story,IF=14.957)

Jiao F#, Lou R#, Dai X#,...,Qian Y*,      Zhao A*, Jiang Y*.      Chromosome-level reference genome and population genomic analysis provide      insight into the evolution and improvement of domesticated mulberry (Morus      alba L). Molecular Plant (2020)(IF=21.949)

Pan X#, Cai Y#, Li Z#,..., Wang W*, Jiang      Y*. Modes of genetic adaptations underlying functional      innovations in the rumen.  SCIENCE CHINA Life Sciences       (2020)(cover story,IF=10.372)

Cai Y#, Fu W#, Cai D#,..., Jiang Y*,      Wang X*. Ancient genomes reveal the evolutionary history and      origin of cashmere producing goats in China. Molecular Biology      and Evolution  (2020)(cover story,IF=8.800)

Chen, N#, Fu W#, Zhao J#,..., Jiang,      Y*. The Bovine Genome Variation Database (BGVD): Integrated      Web-database for Bovine Sequencing Variations and Selective Signatures.      Genomics, Proteomics & Bioinformatics  (2020)(IF=6.409)

Sun T#, Shen S#, Achilli A#,..., Jiang      Y*, Lei C*. Genomic Analyses Reveal Distinct Genetic Architectures      and Selective Pressures in Buffaloes. GigaScience       (2020)(IF=7.658)

Wang J#, Fu W#,..., Jiang Y*,      Kang Z*. WGVD: an integrated web-database for wheat genome      variation and selective signatures. Database-The Journal of      Biological Databases and Curation (2020)(IF=4.462)

2019

Chen L#, Qiu Q#, Jiang Y#,...,      Heller R*, Wang W*. Large-scale ruminant genome sequencing provides insights      into their evolution and distinct traits. Science       (2019)(cover story,IF=63.714)

Wang Y#, Zhang C#, Wang N#,..., Jiang      Y*,Wang W*, Q Qiang*. Genetic basis of ruminant headgear and rapid antler      regeneration. Science  (2019)(cover story,IF=63.714)

Cheng H#，Liu J#，Wen J#,..., Song W*, Sun Q*, Jiang Y*. Frequent intra- and inter-species introgression shapes      the landscape of genetic variation in bread wheat. Genome      Biology  (2019)(IF=17.906)

Tian X#, Li R#, Fu W#,..., Li M, Jiang      Y*. Building a sequence map of the pig pan-genome from      multiple de novo assemblies and Hi-C data. SCIENCE CHINA Life      Sciences  (2019)(IF=10.372)

Li R#, Tian, X#,..., Jiang Y*. Recovery of non-reference sequences missing from the human      reference genome. BMC Genomics (2019)(IF=4.547)

Cao Y#, Xu H#, Li R#,..., Luo J*, Jiang      Y*. Genetic Basis of Phenotypic Differences Between Chinese      Yunling Black Goats and Nubian Goats Revealed by Allele-Specific      Expression in Their F1 Hybrids.  Frontiers in Genetics       (2019)(IF=4.772)

Li R#, Fu W#,Su R#,...,Li J*, Jiang      Y*. Towards the Complete Goat Pan-Genome by Recovering      Missing Genomic Segments From the Reference Genome. Frontiers in      Genetics (2019)(IF=4.772)

Li C#, Li M#, Li X#,..., Jiang Y*，Hu S*. Whole-genome resequencing reveals loci associated with      thoracic vertebrae number in sheep. Frontiers in Genetics       (2019)(IF=4.772)

Wang Y#, Gao S#, Zhao Y#,..., Jiang      Y*. Allele-specific expression and alternative splicing in      horse×donkey and cattle×yak hybrids. ZOOLOGICAL RESEARCH       (2019)(cover story,IF=6.975)

2018

Chen N#, Cai Y#, Chen Q#,..., Jiang      Y*, Lei C*. Whole-genome resequencing reveals world-wide ancestry and      multiple adaptive introgression events of domesticated cattle in East      Asia. Nature communications  (2018)(IF=17.694)

Zhou Z#, Li M#, Cheng H#,..., Hou      S*, Jiang Y*. An intercross population study reveals genes associated      with body size and plumage color in ducks. Nature communications       (2018)(IF=17.694)

Wang X#, Liu J#, Niu Y#,..., Huang X, Jiang      Y*, Chen Y*. Low incidence of SNVs and indels in trio genomes of      Cas9-mediated multiplex edited sheep. BMC Genomics       (2018)(IF=4.547)

2017

Wang X#, Zheng Z#, Cai Y#,..., Jiang      Y*. CNVcaller: Highly Efficient and Widely Applicable      Software for Detecting Copy Number Variations in Large Populations.      GigaScience  (2017)(IF=7.658)

Li M#, Zhou H#, Pan X#,..., Zi X, Jiang      Y*. Cassava foliage affects the microbial diversity of      Chinese indigenous geese caecum using 16S rRNA sequencing.      Scientific Reports  (2017)(IF=4.996)

2015

Zhou Z#, Jiang Y#, Wang Z,...,      Wang W*, Tian Z*. Resequencing 302 wild and cultivated accessions      identifies genes related to domestication and improvement in soybean.      Nature Biotechnology  (2015)  (ESI Highly Cited Papers) (IF=68.164)

Dong Y#, Zhang X#, Xie M#,..., Wang W*,      Jiang Y*. Reference genome of wild goat (Capra aegagrus) and      sequencing of goat breeds provide insight into genic basis of goat      domestication. BMC Genomics  (2015)(IF=4.547)

Jiang Y#,      Wang X#, Kijas J#, Dalrymple B#. Beta globin gene evolution in the ruminants: evidence for      an ancient origin of sheep haplotype B. Animal Genetics       (2015)(IF=2.884)

Chen H#, Jiang Y*. Progress and Prospects in Domestic Animals and Breeding:      a Review of Genomic Copy Number Variations.  Biotechnology      Bulletin  (2015)(IF=1.932)

2014 and before

Jiang Y#,      Xie M#, Chen W#,..., Wang W*, Brian P. Dalrymple*.      The sheep genome illuminates biology of the rumen and lipid metabolism.       Science  (2014) (ESI Highly Cited Papers) (IF=63.714)

Dong Y#, Xie M#, Jiang Y#, …,      Wang J*, Wang W* Sequencing      and automated whole-genome optical mapping of the genome of a domestic      goat. Nature Biotechnology (2013)  (ESI      Highly Cited Papers) (IF=68.164)

Jiang Y#, Li Y#, Lee W#, …, Zhang Y*, Wang W*      Venom gland transcriptomes of two elapid      snakes (Bungarus multicinctus and Naja atra) and evolution of toxin genes.  BMC Genomics       (2011)(IF=4.547)

Li D#, Dong Y#, Jiang Y#, Jiang      H#, Cai J, Wang W*. A      de novo originated gene depresses budding yeast mating pathway and is      repressed by the protein encoded by its antisense strand.  Cell      research  (2010)(IF=46.297)